DevoZoo

Various computational approaches, model organisms, and their associated developmental processes

Get to know your fellow group members and collaborators.

Various methods employed by the DevoWorm group.

Graphical Analysis of Developmental Trees (AoDT):

Information Isometry (see Information Isometry Technique Reveals Organizational Features in Developmental Cell Lineages. bioRxiv, doi:10.1101/062539).

AoDT Github repository link.

Cell Type Alignment:

CAST Alignment (see Quantifying Mosaic Development: Towards an Evo-Devo Postmodern Synthesis of the Evolution of Development Via Differentiation Trees of Embryos. Biology, 5(3), 33).

CAST Alignment Demo link.

Machine Learning:

OpenDevoCell repository link.

Digital Bacillaria repository link.

Embryo Networks:

4-dimensional Structure (see Cell Differentiation Processes as Spatial Networks: identifying four-dimensional structure in embryogenesis). BioSystems, 173, 235-246).

Theoretical Types of Embryo/Developmental Networks link

Embryogenetic Connectome Github repository link.

Dynamical Heterochrony:

Jupyter Notebook and Manuscript link.

Triangular State Machines (TSMs):

Github repository link.

DevoZoo

Various computational approaches, model organisms, and their associated developmental processes

Various methods employed by the DevoWorm group.

Educational resources for the DevoWorm group