Various computational approaches, model organisms, and their associated developmental processes
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Various methods employed by the DevoWorm group.
Graphical Analysis of Developmental Trees (AoDT):
Information Isometry (see Information Isometry Technique Reveals Organizational Features in Developmental Cell Lineages. bioRxiv, doi:10.1101/062539.
AoDT Github repository link.
Cell Type Alignment:
CAST Alignment (see Quantifying Mosaic Development: Towards an Evo-Devo Postmodern Synthesis of the Evolution of Development Via Differentiation Trees of Embryos). Biology, 5(3), 33.
CAST Alignment Demo link.
4_dimensional Structure (see Cell Differentiation Processes as Spatial Networks: identifying four-dimensional structure in embryogenesis). BioSystems, 173, 235-246.
Theoretical Types of Embryo/Developmental Networks link
Embryogenetic Connectome Github repository link.
Jupyter Notebook and Manuscript link.
Triangular State Machines (TSMs):
Github repository link.